Welcome to LRSCRPM’s documentation!

LRSCRPM is an integrative workflow for single cell bioinformatians, biologists, and other researchers that preprocesses long read single cell RNA-seq data, identifies differential expressed RNA isoforms and genes, and estimates the RNA velocity. It first uses BLAZE to identify the cell barcodes, which suggest which cell a read comes from.

Check out the Usage section for further information.

Note

This project is under active development.

Contents

• Usage
  • Installation
  • Generating the putative barcode and barcode whitelist
• API
  • LRSCRPM